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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vir-nw</journal-id><journal-title-group><journal-title xml:lang="ru">Труды по прикладной ботанике, генетике и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Proceedings on applied botany, genetics and breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2227-8834</issn><issn pub-type="epub">2619-0982</issn><publisher><publisher-name>N.I. Vavilov All-Russian Institute of Plant Genetic Resources</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.30901/2227-8834-2019-4-88-93</article-id><article-id custom-type="elpub" pub-id-type="custom">vir-nw-460</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ГЕНЕТИКА КУЛЬТУРНЫХ РАСТЕНИЙ И ИХ ДИКИХ РОДИЧЕЙ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>GENETICS OF CULTIVATED PLANTS AND THEIR WILD RELATIVES</subject></subj-group></article-categories><title-group><article-title>Оценка генетического разнообразия популяций Tulipa suaveolens Волгоградской области</article-title><trans-title-group xml:lang="en"><trans-title>Genetic diversity of Tulipa suaveolens Roth populations in Volgograd Province</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Крицкая</surname><given-names>Т. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Kritskaya</surname><given-names>T. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>410012 г. Саратов, ул. Астраханская, 83</p></bio><bio xml:lang="en"><p>83 Astrakhanskaya St., Saratov 410012</p></bio><email xlink:type="simple">kritckaiata@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Кашин</surname><given-names>А. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Kashin</surname><given-names>A. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>410012 г. Саратов, ул. Астраханская, 83</p></bio><bio xml:lang="en"><p>83 Astrakhanskaya St., Saratov 410012</p></bio><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Саратовский национальный исследовательский государственный университет им. Н.Г. Чернышевского</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Saratov State University</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>07</day><month>01</month><year>2020</year></pub-date><volume>180</volume><issue>4</issue><fpage>88</fpage><lpage>93</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Крицкая Т.А., Кашин А.С., 2020</copyright-statement><copyright-year>2020</copyright-year><copyright-holder xml:lang="ru">Крицкая Т.А., Кашин А.С.</copyright-holder><copyright-holder xml:lang="en">Kritskaya T.A., Kashin A.S.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://elpub.vir.nw.ru/jour/article/view/460">https://elpub.vir.nw.ru/jour/article/view/460</self-uri><abstract><sec><title>Материалы и методы</title><p>Материалы и методы. Для анализа 125 образцов 10 популяций T. suaveolens Волгоградской области и 4 популяций Саратовской области были выбраны молекулярно-генетические ISSR-маркеры. Результаты. ISSR-анализ позволил выявить высокий уровень полиморфизма (73−89%) внутри популяций T. suaveolens Волгоградской области. По результатам AMOVA, большая часть изменчивости (74,3%) приходится на внутрипопуляционный полиморфизм. Доля изменчивости, которая приходится на межпопуляционные различия, составила 25,7%. Общая подразделенность популяций (FST) равна 0,257. Общий поток генов (Nm) между популяциями – 0,723. Согласно результатам байесовского анализа и кластеризации двумя различными методами (UPGMA и Neighbor Joining), все исследованные особи T. suaveolens Волгоградской области образуют одну большую генетическую группу, в которой ни одна из потенциальных подгрупп не может быть ассоциирована с тем или иным районом сбора образцов.</p><p>Результаты, полученные в программе NewHybrids, указывают на гибридную природу большей части особей. Отдельную генетическую группу составили образцы трех популяций Саратовской области, которые были отнесены в категорию родительской формы.</p></sec><sec><title>Заключение</title><p>Заключение. Учитывая то, что в пределах административных границ Волгоградской области популяции T. suaveolens слабо отличаются друг от друга генетически и охраняются на территории всех природных парков области, а также ряда особо охраняемых природных территорий, введенные меры охраны следует считать достаточными для сохранения вида. </p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Background</title><p>Background. The current natural habitat of Tulipa suaveolens Roth rapidly decreases. In order to work out the strategy of the species’ preservation, evaluation of its intraand interpopulation polymorphism is required.</p></sec><sec><title>Materials and methods</title><p>Materials and methods. Molecular-genetic ISSR markers were used to analyze 125 samples from 10 populations of T. suaveolens occurring in Volgograd Province and 4 populations from Saratov Province.</p></sec><sec><title>Results</title><p>Results. ISSR analysis revealed high intrapopulation polymorphism (73–89%) in T. suaveolens populations form Volgograd Province. AMOVA attributed the largest proportion of variability (74.3%) to intrapopulation polymorphism. Interpopulation differences account for 25.7%. Total subdivision of populations (FST) was 0.257; total gene flow (Nm) between populations was 0.723. According to Bayesian analysis and clustering with both UPGMA and Neighbor Joining methods, all the studied T. suaveolens samples from Volgograd Province make up a large genetic group: within that group none of the potential subgroups may be associated with a particular place of collecting. The NewHybrids software was applied, and the results pointed to the hybrid nature of most samples. Samples of three populations from Saratov Province made up a separate genetic group; those samples fell under the category of parent forms.</p></sec><sec><title>Conclusion</title><p>Conclusion. Considering that genetic subdivision of T. suaveolens populations within the administrative borders of Volgograd Province is insignificant, while all the province’s natural parks and a number of protected natural areas undertake measures to preserve the species, the existing conservation strategy may be recognized as effective and sufficient.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>Tulipa schrenkii</kwd><kwd>ISSR-анализ</kwd><kwd>программа NewHybrids</kwd><kwd>Волгоградская область</kwd></kwd-group><kwd-group xml:lang="en"><kwd>Tulipa schrenkii</kwd><kwd>ISSR analysis</kwd><kwd>NewHybrids software</kwd><kwd>Volgograd Province</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Работа выполнена при поддержке гранта РФФИ № 1604-00142.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Anderson E.C., Williamson E.G., Thompson E.A. Monte Carlo evaluation of the likelihood for Ne from temporallyspaced samples. Genetics. 2000;156(4):2109-2118.</mixed-citation><mixed-citation xml:lang="en">Anderson E.C., Williamson E.G., Thompson E.A. Monte Carlo evaluation of the likelihood for Ne from temporallyspaced samples. Genetics. 2000;156(4):2109-2118.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Earl D.A., vonHoldt B.M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources. 2012;4(2):359-361. DOI: 10.1007/s12686-011-9548-7</mixed-citation><mixed-citation xml:lang="en">Earl D.A., vonHoldt B.M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources. 2012;4(2):359-361. DOI: 10.1007/s12686-011-9548-7</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Evanno G., Reqnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simu lation study. Molecular Ecology. 2005;14(8):2611-2620. DOI: 10.1111/j.1365-294X.2005.02553.x</mixed-citation><mixed-citation xml:lang="en">Evanno G., Reqnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simu lation study. Molecular Ecology. 2005;14(8):2611-2620. DOI: 10.1111/j.1365-294X.2005.02553.x</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Excoffier L., Lischer H.E.L. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 2010;10(3):564-567. DOI: 10.1111/j.1755-0998.2010.02847.x</mixed-citation><mixed-citation xml:lang="en">Excoffier L., Lischer H.E.L. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 2010;10(3):564-567. DOI: 10.1111/j.1755-0998.2010.02847.x</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Hammer O., Harper D. A.T., Ryan P.D. PAST: Palaeontologica Statistics software package for education and data analysis. Palaeontologia Electronica. 2001;4(1):1-9.</mixed-citation><mixed-citation xml:lang="en">Hammer O., Harper D. A.T., Ryan P.D. PAST: Palaeontologica Statistics software package for education and data analysis. Palaeontologia Electronica. 2001;4(1):1-9.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23(2):254-267. DOI: 10.1093/molbev/msj030</mixed-citation><mixed-citation xml:lang="en">Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23(2):254-267. DOI: 10.1093/molbev/msj030</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Jakobsson M., Rosenberg N.A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2007;23(14):1801-1806. DOI: 10.1093/bioinformatics/btm233</mixed-citation><mixed-citation xml:lang="en">Jakobsson M., Rosenberg N.A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2007;23(14):1801-1806. DOI: 10.1093/bioinformatics/btm233</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Kashin A.S., Kritskaya T.A., Schanzer I.A. Genetic polymorphism of Tulipa gesneriana L. evaluated on the basis of the ISSR marking data. Russian Journal of Genetics. 2016;52(10):1023-1033. DOI: 10.1134/S1022795416100045</mixed-citation><mixed-citation xml:lang="en">Kashin A.S., Kritskaya T.A., Schanzer I.A. Genetic polymorphism of Tulipa gesneriana L. evaluated on the basis of the ISSR marking data. Russian Journal of Genetics.  2016;52(10):1023-1033. DOI: 10.1134/S1022795416100045</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Khadeeva N.V., Goryunova S.V., Yakovleva Y.Y., Melnikova N.V., Kudryavtsev A.M., Kochumova A.A. et al. Genetic monitoring of populations of Matthiola fragrans (Bunge) using RAPD and AFLP analysis. Biology Bulletin. 2011;38(4):325-331. DOI: 10.1134/S1062359011040078</mixed-citation><mixed-citation xml:lang="en">Khadeeva N.V., Goryunova S.V., Yakovleva Y.Y., Melnikova N.V., Kudryavtsev A.M., Kochumova A.A. et al. Genetic monitoring of populations of Matthiola fragrans (Bunge) using RAPD and AFLP analysis. Biology Bulletin. 2011;38(4):325-331. DOI: 10.1134/S1062359011040078</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Khadeeva N.V., Yakovleva E.Y., Goryunova S.V., Shishkina A.A., Kudryavtsev A.M., Kochumova A.A. et al. Characterization of the Bellevalia sarmatica (Georgi) Woronov populations from Volgograd oblast using molecular genetic identification. Russian Journal of Genetics. 2012;48(6):599-604. DOI: 10.1134/S1022795412050109</mixed-citation><mixed-citation xml:lang="en">Khadeeva N.V., Yakovleva E.Y., Goryunova S.V., Shishkina A.A., Kudryavtsev A.M., Kochumova A.A. et al. Characterization of the Bellevalia sarmatica (Georgi) Woronov populations from Volgograd oblast using molecular genetic identification. Russian Journal of Genetics. 2012;48(6):599-604. DOI: 10.1134/S1022795412050109</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Крицкая Т.А., Кашин А.С. Генетический полиморфизм Тюльпана Геснера в Крыму и на прилегающих территориях. В кн.: Научные труды Национального парка «Хвалынский»: сб. науч. ст. по материалам V научно-практической конференции «Особо охраняемые природные территории: прошлое, настоящее, будущее». Т. 10. Саратов – Хвалынск: ООО «Амирит»; 2018. С. 80-86</mixed-citation><mixed-citation xml:lang="en">Kritskaya T.A., Kashin A.S. Genetic polymorphism of Tulipa gesneriana in the Crimea and adjacent territories. In: Scientific works of the national Park “Khvalynsky”: Collection of scientific articles on the materials of the V International scientific-practical conference “Specially protected natural areas: past, present, future”. Vol. 10. Saratov – Khvalynsk : Amirit Press, 2018. p.80-86. [in Russian]</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Крицкая Т. А., Кашин А. С., Шанцер И. А., Данилов В. А. Генетическая дифференциация Tulipa suaveolens (Liliaceae) на северо-востоке ареала в европейской части России. Ботанический журнал. 2018;103(2):187-200. DOI: 10.1134/S0006813618020023</mixed-citation><mixed-citation xml:lang="en">Kritskaya T.A., Kashin A.S., Schanzer I.A., Danilov V.A. Genetic differentiation of Tulipa suaveolens (Liliaceae) in the North-East of its range in the European part of Russia. Botanicheskii Zhurnal = Botanical Journal. 2018;103(2):187-200. [in Russian] DOI: 10.1134/S0006813618020023</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Мордак Е.В. Что такое Tulipa schrenkii Regel и T. heteropetala Ledeb. (Liliaceae)? Новости систематики высших растений. 1990;27:27-32.</mixed-citation><mixed-citation xml:lang="en">Mordak H. Quid est Tulipa schrenkii Regel et T. heteropetala Ledeb. (Liliaceae)? Novitates Systematicae Plantarum Vascularum, 1990;27:27-32.  [in Russian]</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Попов А.В., Луконина А.В., Супрун Н.А. Тюльпан Геснера (Шренка). В кн.: Красная книга Волгоградской области. Т. 2. Растения и другие организмы / под ред. О.Г. Барановой, В.А. Сагалаева. Воронеж: ООО «Издат-Принт»; 2017. С.151.</mixed-citation><mixed-citation xml:lang="en">Popov A.V., Lukonina A.V., Suprun N.A. Tulipa gesneriana L. (T. schrenkii Regel). In: Baranova O.G., Sagalaev V.A. (eds). Red Data Book of Volgograd Province. Vol. ͮ. Plants and other organisms (Krasnaya kniga Volgogradskoy oblasti. T.2. Rasteniya i drugiye organizmy). Voronezh: Izdat-Print; 2017. p.151 [in Russian]</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945-959.</mixed-citation><mixed-citation xml:lang="en">Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945-959.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Трифонова А.А., Кочиева Е.З., Кудрявцев А.М. Низкий уровень подразделенности популяций редкого вида Allium regelianum A.K. Becker ex Iljin Волгоградской области на основе данных ISSRанализа. Экологическая генетика. 2017;15(1):30-37. DOI: 10.17816/ecogen15130-37</mixed-citation><mixed-citation xml:lang="en">Trifonova A.A., Kochieva E.Z., Kudryavtsev A.M. Low level of genetic differentiation among populations of the rare species Allium regelianum A.K. Becker ex Iljin from the Volgograd region detected by ISSRanalysis. Ecological Genetics. 2017;15(1):30-37. [in Russian] DOI: 10.17816/ecogen15130-37</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Zonneveld B.J.M. The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae). Plant Systematics and Evolution. 2009;281(1-4):217-245. DOI: 10.1007/s00606-009-0203-7</mixed-citation><mixed-citation xml:lang="en">Zonneveld B.J.M. The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae). Plant Systematics and Evolution. 2009;281(1-4):217-245.  DOI: 10.1007/s00606-009-0203-7</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
