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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vir-nw</journal-id><journal-title-group><journal-title xml:lang="ru">Труды по прикладной ботанике, генетике и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Proceedings on applied botany, genetics and breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2227-8834</issn><issn pub-type="epub">2619-0982</issn><publisher><publisher-name>N.I. Vavilov All-Russian Institute of Plant Genetic Resources</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.30901/2227-8834-2023-3-146-160</article-id><article-id custom-type="elpub" pub-id-type="custom">vir-nw-1661</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ИДЕНТИФИКАЦИЯ ГЕНЕТИЧЕСКОГО РАЗНООБРАЗИЯ КУЛЬТУРНЫХ РАСТЕНИЙ И ИХ ДИКИХ РОДИЧЕЙ ДЛЯ РЕШЕНИЯ ФУНДАМЕНТАЛЬНЫХ И ПРИКЛАДНЫХ ПРОБЛЕМ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>IDENTIFICATION OF THE DIVERSITY OF CULTIVATED PLANTS AND THEIR WILD RELATIVES FOR SOLVING FUNDAMENTAL AND APPLIED PROBLEMS</subject></subj-group></article-categories><title-group><article-title>Изучение генетической структуры коллекции сортов райграса (Lolium)  с использованием SSR- и SCoT-маркеров</article-title><trans-title-group xml:lang="en"><trans-title>Genetic structure of the collection of ryegrass (Lolium) cultivars: a study based on SSR and SCoT markers</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5695-6242</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Мавлютов</surname><given-names>Ю. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Mavlyutov</surname><given-names>Yu. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Юлиан Муратович Мавлютов, научный сотрудник, Федеральный научный центр кормопроизводства и агроэкологии им. В.Р. Вильямса, аспирант, Российский государственный аграрный университет – МСХА имени К.А. Тимирязева</p><p>141055 Московская область, Лобня, Научный городок, корпус 1,</p><p>127550 Москва, ул. Тимирязевская, 49</p></bio><bio xml:lang="en"><p>Yulian M. Mavlyutov, Researcher, Federal Williams Research Center of Forage Production and Agroecology, Postgraduate Student, Russian State Agrarian University – Moscow Timi- ryazev Agricultural Academy</p><p>Bldg. 1, Scientific Campus, Lobnya, Moscow Province 141055,</p><p>49 Timiryazevskaya St., Moscow 127550</p></bio><email xlink:type="simple">yulian92@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2457-7253</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Вертикова</surname><given-names>Е. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Vertikova</surname><given-names>E. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Елена Александровна Вертикова, доктор сельскохозяйственных наук, доцент, профессор</p><p>127550 Москва, ул. Тимирязевская, 49</p></bio><bio xml:lang="en"><p>Elena A. Vertikova, Dr. Sci. (Agriculture), Associate Professor, Professor</p><p>49 Timiryazevskaya St., Moscow 127550</p></bio><email xlink:type="simple">vertikovaea@yandex.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3535-3108</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шамустакимова</surname><given-names>А. О.</given-names></name><name name-style="western" xml:lang="en"><surname>Shamustakimova</surname><given-names>A. O.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Анастасия Олеговна Шамустакимова, научный сотрудник</p><p>141055 Московская область, Лобня, Научный городок, корпус 1</p></bio><bio xml:lang="en"><p>Anastasia O. Shamustakimova Researcher</p><p>Bldg. 1, Scientific Campus, Lobnya, Moscow Province 141055</p></bio><email xlink:type="simple">nastja_sham@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1850-3859</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Клименко</surname><given-names>И. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Klimenko</surname><given-names>I. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Ирина Александровна Клименко, кандидат сельскохозяйственных наук, ведущий научный сотрудник, заведующая лабораторией</p><p>141055 Московская область, Лобня, Научный городок, корпус 1</p></bio><bio xml:lang="en"><p>Irina A. Klimenko, Cand. Sci. (Agriculture), Senior Researcher, Head of a Laboratory</p><p>Bldg. 1, Scientific Campus, Lobnya, Moscow Province 141055</p></bio><email xlink:type="simple">iaklimenko@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Федеральный научный центр кормопроизводства и агроэкологии им. В.Р. Вильямса;&#13;
Российский государственный аграрный университет – МСХА имени К.А. Тимирязева</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Federal Williams Research Center of Forage Production and Agroecology;&#13;
Russian State Agrarian University – Moscow Timiryazev Agricultural Academy</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Российский государственный аграрный университет – МСХА имени К.А. Тимирязева</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Russian State Agrarian University – Moscow Timiryazev Agricultural Academy</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Федеральный научный центр кормопроизводства и агроэкологии им. В.Р. Вильямса</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Federal Williams Research Center of Forage Production and Agroecology</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2023</year></pub-date><pub-date pub-type="epub"><day>23</day><month>10</month><year>2023</year></pub-date><volume>184</volume><issue>3</issue><fpage>146</fpage><lpage>160</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Мавлютов Ю.М., Вертикова Е.А., Шамустакимова А.О., Клименко И.А., 2023</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="ru">Мавлютов Ю.М., Вертикова Е.А., Шамустакимова А.О., Клименко И.А.</copyright-holder><copyright-holder xml:lang="en">Mavlyutov Y.M., Vertikova E.A., Shamustakimova A.O., Klimenko I.A.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://elpub.vir.nw.ru/jour/article/view/1661">https://elpub.vir.nw.ru/jour/article/view/1661</self-uri><abstract><sec><title>Актуальность</title><p>Актуальность. С помощью современных молекулярно-генетических методов анализа можно существенно ускорить процесс создания новых сортов, упростить и повысить точность оценки исходного материала. В настоящей работе изучена эффективность использования техник SSR- и SCoT-маркирования для оценки генетической структуры коллекции образцов райграса пастбищного и однолетнего и определения набора сортоспецифичных маркеров для ДНК-идентификации.</p></sec><sec><title>Материалы и методы</title><p>Материалы и методы. Геномную ДНК выделяли из суммарной навески 30 проростков от каждого из 15 исследуемых образцов с помощью модифицированного SDS-метода. Для анализа сортов райграса использовали 20 SSR- и 22 SCoT-маркера. Определили показатели эффективности для информативных локусов. Генетические взаимосвязи между сортами оценили с помощью дендрограммы, составленной методом Neighbor-Joining (NJ), и путем анализа на основе байесовской модели.</p></sec><sec><title>Результаты</title><p>Результаты. Для оценки генетического полиморфизма видов и сортов райграса были отобраны 7 SSR-локусов, для которых выявлено 110 аллельных вариантов (34 аллели оказались уникальными для отдельных сортов), и 9 SCoT-локусов, для которых выявлено 78 полиморфных фрагментов амплификации (28 из них являлись сортоспецифичными). Дендрограмма сходства и моделирование в программе Structure v.2.3.4 по результатам SSR- и SCoT-анализов распределили сорта согласно видовой принадлежности, уровню плоидности, происхождению и сходству по основным признакам. С помощью анализа главных координат (PCoA), проведенного на основе объединенных данных бинарных матриц, построена многомерная диаграмма генетических взаимосвязей между сортами райграса.</p></sec><sec><title>Заключение</title><p>Заключение. Системы SSR- и SCoT-маркирования оказались достаточно эффективными для изучения генетического полиморфизма и различения видов и сортов райграса. Обнаружены уникальные ДНК-профили, которые можно использовать для генетической идентификации. Результаты исследования имеют практическую значимость при сортовой идентификации и в селекции сортов разного назначения.</p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Background</title><p>Background. Current molecular and genetic approaches make it possible to accelerate ryegrass breeding, simplify source material evaluation, and increase its accuracy. The efficiency of PCR-based SSR and SCoT marker techniques was studied in the context of evaluating the genetic structure of annual and perennial ryegrass accessions and defining DNA-identifying markers.</p></sec><sec><title>Materials and methods</title><p>Materials and methods. Genomic DNA was isolated from the aggregate sample of 30 seedlings from each of the 15 analyzed cultivars according to the modified SDS DNA extraction protocol. In total, 20 SSR and 22 SCoT markers were used to assess genetic polymorphism. Basic parameters of the markers’ informative efficiency were identified. Genetic relationships among the studied cultivars were analyzed on the basis of the Neighbor-Joining dendrogram and Bayesian model.</p></sec><sec><title>Results</title><p>Results. To assess the genetic polymorphism of ryegrass species and varieties, 7 SSR loci were selected, for which 110 allelic variants were identified (34 alleles were unique for individual cultivars), and 9 SCoT loci, for which 78 polymorphic amplification fragments were identified, with 28 being cultivar-specific. The dendrogram of genetic similarity and modeling in the Structure v2.3.4 program according to the results of SSR and SCoT analyses distributed the cultivars by their traits according to their species, ploidy level, origin, and similarity. Based on PCoA, carried out using summarized data of SSR and SCoT analyses, a multidimensional diagram of genetic relationships among ryegrass cultivars was constructed.</p></sec><sec><title>Conclusions</title><p>Conclusions. The systems of SSR and SCoT markers appeared to be an efficient tool to reveal genetic polymorphism and identify differences among ryegrass species and cultivars. We found unique DNA profiles that can be used for genetic identification. The results of the study have practical significance in cultivar-specific identification and selection of cultivars for various purposes.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>райграс однолетний</kwd><kwd>райграс пастбищный</kwd><kwd>ДНК-полиморфизм</kwd><kwd>генетическая структура коллекции</kwd></kwd-group><kwd-group xml:lang="en"><kwd>annual ryegrass</kwd><kwd>perennial ryegrass</kwd><kwd>DNA polymorphism</kwd><kwd>genetic structure of the collection</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Работа выполнена в рамках государственного задания согласно тематическому плану ФНЦ «ВИК им. В.Р. Вильямса» по проекту № FGGW-2022-0007 «Использовать адаптированные методы молекулярно-генетического анализа кормовых культур для создания новых форм, сортов и гибридов с улучшенными хозяйственно ценными признаками». Авторы благодарят рецензентов за их вклад в экспертную оценку этой работы.</funding-statement><funding-statement xml:lang="en">Тhe research was performed within the framework of the state task according to the theme plan of the Federal Williams Research Center of Forage Production and Agroecology, Project No. FGGW-2022-0007 “Using adapted methods of molecular and genetic analysis of forage crops for the development of new forms, cultivars and hybrids with improved useful agronomic characteristics”. The authors thank the reviewers for their contribution to the peer review of this work.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Amar M.H., Biswas M.K., Zhang Z., Guo W.W. Exploitation of SSR, SRAP and CAPS-SNP markers for genetic diversity of Citrus germplasm collection. Scientia Horticulturae. 2011;128(3):220-227. 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